GrabSpectra

From Mswiki

This script wil grab desired spectra based on a file indicating which spectra to grab. The file should have the following format:

filename1.432

filename1.680

filename2.1120

filename2.4531

filename2.9012

OR

filename1.0432.0432.2

filename1.0680.0680.2

filename2.1120.1120.3

filename2.4531.4531.2

filename2.9012.9012.1

To run the script:

/data/6/jrjohns1/perlscripts/GrabSpectra spectrum_list.txt output.ms2

Where spectrum_list.txt is the file with the spectrum IDs formatted as above, and output.ms2 is the file to write the extract spectra into.